Terrible problem on the Octavia's.....
I do think once you have completed the job and bled the brakes you will find that all will be ok (taking into account all the above suggestions of course, ie 'working' the piston a few times carefully though, and removing reservoir cap.
I doubt you have warped anything
Just a good clean off of everything and possibly a bit of filing, refit using Ceratec grease rather than copper grease, especially on the rubbers, bleed them and you should be fine...
A G clamp is your friend for pushing piston back in...